Status
[August 2021] The Schizophyllum commune UNK v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 38.36 |
| Sequencing read coverage depth | 293.63x |
| # of contigs | 826 |
| # of scaffolds | 771 |
| # of scaffolds >= 2Kbp | 621 |
| Scaffold N50 | 50 |
| Scaffold L50 (Mbp) | 0.23 |
| # of gaps | 55 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.11, 0.66, 0.66 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1725 | 1454 |
| transcript | 1368 | 1146 |
| exon | 240 | 144 |
| intron | 78 | 55 |
| description: | ||
| protein length (aa) | 456 | 382 |
| exons per gene | 5.70 | 5 |
| # of gene models | 13333 |
Collaborators
- Robin A. Ohm, Utrecht University, The Netherlands
Links
- JGI PhyloGroup Portals: Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricales Schizophyllum
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
