Info • Schizophyllum commune UNK v1.0

Status

[August 2021] The Schizophyllum commune UNK v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 38.36
Sequencing read coverage depth 293.63x
# of contigs 826
# of scaffolds 771
# of scaffolds >= 2Kbp 621
Scaffold N50 50
Scaffold L50 (Mbp) 0.23
# of gaps 55
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.11, 0.66, 0.66


Gene Models FilteredModels1
length (bp) of: average median
gene 1725 1454
transcript 1368 1146
exon 240 144
intron 78 55
description:
protein length (aa) 456 382
exons per gene 5.70 5
# of gene models 13333


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.