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Info • Schizophyllum commune ZB1 v1.0

Status

[March 2020] The Schizophyllum commune ZB1 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Schizophyllum commune ZB1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.91
Sequencing read coverage depth 179x
# of contigs 782
# of scaffolds 730
# of scaffolds >= 2Kbp 553
Scaffold N50 47
Scaffold L50 (Mbp) 0.22
# of gaps 52
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.24, 0.99, 0.88


Note: The following EST alignment statistics reflect alignment of reference strain H4-8 RNAseq to the strain ZB1 assembly. Based on poor mapping, H4-8 EST contig assemblies were included only as fgenesh_kg training data when determining the final S. commune ZB1 FilteredModels1 annotation.
ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 83121 16854 20.2%


Gene Models FilteredModels2
length (bp) of: average median
gene 1759 1493
transcript 1411 1195
exon 246 147
intron 76 55
description:
protein length (aa) 453 381
exons per gene 5.74 5
# of gene models 13419


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.