Info • Schizophyllum commune ZB2 v1.0

Status

[March 2020] The Schizophyllum commune ZB2 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Schizophyllum commune ZB2 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.39
Sequencing read coverage depth 184.163279854809x
# of contigs 1194
# of scaffolds 1127
# of scaffolds >= 2Kbp 858
Scaffold N50 93
Scaffold L50 (Mbp) 0.11
# of gaps 67
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.77, 0.54, 0.52


Note: The following EST alignment statistics reflect alignment of reference strain H4-8 RNAseq to the strain ZB2 assembly. Based on poor mapping, H4-8 EST contig assemblies were included only as fgenesh_kg training data when determining the final S. commune ZB2 FilteredModels1 annotation.
ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 83121 19377 23.3%


Gene Models FilteredModels2
length (bp) of: average median
gene 1767 1491
transcript 1420 1202
exon 248 147
intron 75 55
description:
protein length (aa) 456 381
exons per gene 5.74 5
# of gene models 13467


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Marian IM, Valdes ID, Hayes RD, LaButti K, Duffy K, Chovatia M, Johnson J, Ng V, Lugones LG, Wösten HAB, Grigoriev IV, Ohm RA
High phenotypic and genotypic plasticity among strains of the mushroom-forming fungus Schizophyllum commune.
Fungal Genet Biol. 2024 Jul 12;():103913. doi: 10.1016/j.fgb.2024.103913

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.