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Info • Schizophyllum commune Loenen D v1.0

Status

June 2013. The genome assembly of Schizophyllum commune Loenen D was sequenced using Illumina technology and assembled using AllPathsLG release version R42328. To assist in gene prediction, ESTs from the reference strain H4-8 were used.

Summary statistics for the Schizophyllum commune Loenen D v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.88
Sequencing read coverage depth 112.3X
# of contigs 1822
# of scaffolds 1774
# of scaffolds >= 2Kbp 1357
Scaffold N50 194
Scaffold L50 (Mbp) 0.05
# of gaps 48
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.32, 0.29, 0.27


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other All_conditions 83121 19187 23.1%
Other Three_conditions 51144 12040 23.5%


Gene Models FilteredModels2
length (bp) of: average median
gene 1708 1438
transcript 1370 1153
exon 247 148
intron 76 55
description:
protein length (aa) 435 363
exons per gene 5.55 4
# of gene models 13827


Collaborators

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.