Info • Schizophyllum commune Tattone D v1.0

Status

June 2013. The genome assembly of Schizophyllum commune Tattone D was sequenced using Illumina technology and assembled using AllPathsLG release version R42328.

Summary statistics for the Schizophyllum commune Tattone D v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.46
Sequencing read coverage depth 109.4X
# of contigs 1757
# of scaffolds 1707
# of scaffolds >= 2Kbp 1309
Scaffold N50 187
Scaffold L50 (Mbp) 0.05
# of gaps 50
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.30, 0.25, 0.24


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other All_conditions 76925 54570 70.9%
Other Three_conditions 63596 50275 79.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1692 1457
transcript 1394 1193
exon 264 158
intron 72 55
description:
protein length (aa) 415 346
exons per gene 5.27 4
# of gene models 15199


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Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.