Info • Scheffersomyces coipomoensis NRRL Y-17651T v1.0

Status

[March 2018] The Scheffersomyces coipomoensis NRRL Y-17651T genome was sequenced with Sequel, assembled with Falcon version 1.8.8, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Scheffersomyces coipomoensis NRRL Y-17651T v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 14.76
Sequencing read coverage depth 31.21x
# of contigs 23
# of scaffolds 23
# of scaffolds >= 2Kbp 23
Scaffold N50 3
Scaffold L50 (Mbp) 2.31
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.76, 2.47, 2.31


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 8036 7091 88.2%
Ests est.fasta 156209702 154058766 98.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1722 1506
transcript 1686 1479
exon 1422 1251
intron 197 90
description:
protein length (aa) 504 427
exons per gene 1.19 1
# of gene models 6180


Collaborators

Chris Hittinger, U. of Wisconsin-Madison, WI

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Barros Katharina O., Mader Megan, Krause David J., Pangilinan Jasmyn, Andreopoulos Bill, Lipzen Anna, Mondo Stephen J., Grigoriev Igor V., Rosa Carlos A., Sato Trey K., Hittinger Chris Todd
Oxygenation influences xylose fermentation and gene expression in the yeast genera Spathaspora and Scheffersomyces
Biotechnol Biofuels. 2024;17(1): doi: 10.1186/s13068-024-02467-8

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.