Info • Scheffersomyces illinoisensis NRRL Y-48827T v1.1


[August 2021] The Scheffersomyces illinoisensis NRRL Y-48827T v1.1 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section. In contrast to the v1.0 portal, this annotation has been improved through use of new RNAseq data.

Genome Assembly
Genome Assembly size (Mbp) 14.63
Sequencing read coverage depth 275.91x
# of contigs 8
# of scaffolds 8
# of scaffolds >= 2Kbp 8
Scaffold N50 3
Scaffold L50 (Mbp) 1.79
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.31, 2.60, 1.79

Please note RNA data suffers from contamination. Unmapped RNA reads are hitting organisms in the target order.
ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 40584 14449 35.6%
Ests est.fasta 180658507 177933330 98.5%

Gene Models FilteredModels1
length (bp) of: average median
gene 1815 1568
transcript 1782 1547
exon 1495 1318
intron 174 93
protein length (aa) 506 428
exons per gene 1.19 1
# of gene models 5931



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.