Status
The Scheffersomyces lignosus NRRL Y-12856T v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 16.66 |
| Sequencing read coverage depth | 144.8x |
| # of contigs | 9 |
| # of scaffolds | 9 |
| # of scaffolds >= 2Kbp | 9 |
| Scaffold N50 | 3 |
| Scaffold L50 (Mbp) | 2.52 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 3.29, 2.63, 2.52 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 8660 | 7966 | 92.0% |
| Ests | est.fasta | 142861858 | 142500025 | 99.7% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1832 | 1590 |
| transcript | 1788 | 1561 |
| exon | 1446 | 1272 |
| intron | 186 | 98 |
| description: | ||
| protein length (aa) | 511 | 427 |
| exons per gene | 1.24 | 1 |
| # of gene models | 6121 |
Collaborators
- Chris Hittinger, U. of Wisconsin-Madison, WI
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Debaryomycetaceae
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
