Info • Schizothecium vesticola SMH3187-1 v1.0

Status

[July 2017] The Schizothecium vesticola SMH3187-1 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Schizothecium vesticola SMH3187-1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.94
Sequencing read coverage depth 120.13x
# of contigs 9
# of scaffolds 9
# of scaffolds >= 2Kbp 9
Scaffold N50 3
Scaffold L50 (Mbp) 5.19
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 7.08, 5.71, 5.19


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 31150 30668 98.5%
Ests est.fasta 109147868 108916524 99.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1683 1415
transcript 1521 1263
exon 555 339
intron 95 62
description:
protein length (aa) 444 354
exons per gene 2.74 2
# of gene models 12641


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.