Info • Sclerogaster hysterangioides SCL2.BST v1.0


(Apr 2016) The Sclerogaster hysterangioides SCL2.BST genome was sequenced using Illumina and PacBio technologies, assembled with Falcon, improved with finisherSC, and polished with Quiver.

The JGI annotation pipeline identified 3,463 gene models as possible diploid alleles, and excluded them from the filtered model/gene catalog set. These models are shown in the track "secondary_alleles", and are available from the download page.

Summary statistics for the Sclerogaster hysterangioides SCL2.BST v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 124.26
Sequencing read coverage depth
# of contigs 901
# of scaffolds 901
# of scaffolds >= 2Kbp 887
Scaffold N50 55
Scaffold L50 (Mbp) 0.52
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.48, 2.66, 2.47

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 45946 44509 96.9%
Ests est.fasta 175137992 174595067 99.7%

Gene Models FilteredModels2
length (bp) of: average median
gene 1544 1300
transcript 1235 1033
exon 205 131
intron 63 55
protein length (aa) 355 283
exons per gene 6.03 5
# of gene models 16656



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.