Info • Sclerophora sanguinea CBS100924 v1.0

Status

[April 2017] The Sclerophora sanguinea CBS100924 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Sclerophora sanguinea CBS100924 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 18.02
Sequencing read coverage depth 89.7x
# of contigs 147
# of scaffolds 69
# of scaffolds >= 2Kbp 43
Scaffold N50 5
Scaffold L50 (Mbp) 1.76
# of gaps 78
% of scaffold length in gaps 1.0%
Three largest Scaffolds (Mbp) 2.55, 2.23, 1.84


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 30424 16487 54.2%
Ests est.fasta 98313001 42808922 43.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1752 1485
transcript 1600 1347
exon 463 265
intron 64 54
description:
protein length (aa) 478 390
exons per gene 3.45 3
# of gene models 7223


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.