Info • Sebacina vermifera MAFF 305830 v1.0

Status

Assembly v1 (March 2012) is a draft assembly of Solexa gDNA reads. A total of 546 scaffolds and 38.1 Mbp were assembled using AllPathsLG.

Summary statistics for the Sebacina vermifera MAFF 305830 v1.0 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 38.09
Sequencing read coverage depth 117.2x
# of contigs 2457
# of scaffolds 546
# of scaffolds >= 2Kbp 430
Scaffold N50 29
Scaffold L50 (Mbp) 0.32
# of gaps 1911
% of scaffold length in gaps 6.9%
Three largest Scaffolds (Mbp) 1.90, 1.28, 1.23


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_Combest_RNA_contigs 95170 83352 87.6%
Other JGI_Rnnotator_RNA_contigs 28027 22731 81.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1675 1349
transcript 1372 1130
exon 277 160
intron 79 54
description:
protein length (aa) 410 329
exons per gene 4.94 4
# of gene models 15312


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.