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Info • Serendipita vermifera ssp. bescii NFPB0129 v1.0

Status

Assembly v1 (January 2015) is a minimal draft assembly, using Illumina gDNAs assembled successively with Velvet and AllPathsLG.

Summary statistics for the Sebacina vermifera ssp. bescii v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.85
Sequencing read coverage depth 251.1x
# of contigs 1685
# of scaffolds 827
# of scaffolds >= 2Kbp 627
Scaffold N50 48
Scaffold L50 (Mbp) 0.20
# of gaps 858
% of scaffold length in gaps 2.7%
Three largest Scaffolds (Mbp) 1.11, 1.09, 0.83


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 56784 49880 87.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1806 1534
transcript 1517 1290
exon 284 163
intron 68 55
description:
protein length (aa) 442 357
exons per gene 5.34 4
# of gene models 14208


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.