Info • Selaginella moellendorffii v1.0
Please note that the latest data is available at Phytozome.
To view archival data, please see Selaginella moellendorffii v1.0.


v1.0 (December 20, 2007): The Selaginella moellendorffii genome sequence assembly v1.0 was built with Arachne assembler from whole genome shotgun and paired end sequencing reads. The nuclear genome sequence from this draft assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses.

Summary statistics for the S. moellendorffii v1.0 release:

Nuclear Genome Assembly1 v1.0
Nuclear genome size (Mbp) 212.5
Sequencing read coverage depth 7.0x
Reported # of contigs 5,156
# of nuclear scaffolds 759
# of nuclear scaffolds >2 Kbp 726
Nuclear scaffold N/L50 38/1.7 Mbp
Three largest Scaffolds (Mbp) 7.0
[1] While the estimated genome size is 110Mb, we sequenced two divergent haplotypes of Selaginella so this assembly represents 212 Mb of genomic sequence. The statistics above include only nuclear scaffolds1kb or longer.
ESTs: Data set # sequences total # mapped to genome # not mapped to genome % mapped to genome
EST clusters EstClusters_556_S_moellendorffii_Jgi20060227 19,871 17,514 2,357 88%
ESTs Ests_naEstSelaginella_moellendorffiiAll20060227 93,812 89,049 4,763 95%
Gene Models2 v1.0 all scaffolds2 v1.0 non-redundant3
length (bp) of: average
gene 1711.37> 1701.63
transcript 1229.57 1193.81
exon 213.66 213.44
intron 103.33 112.56
protein length (aa) 392.04 381.85
exons per gene 5.75> 5.59
# of gene models 34,697 22,285

[2] FilteredModels2 gene model track
[3] FilteredModels3 gene model track

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.