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Info • Septobasidium sp. PNB30-8B v1.0

Status

[April 2015] The Septobasidium sp. PNB30-8B genome was sequenced using the Illumina platform and assembled together with AllPathsLG version R49403, (Gnerre et al., 2010). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Septobasidium sp. PNB30-8B v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 27.51
Sequencing read coverage depth 80.5x
# of contigs 751
# of scaffolds 236
# of scaffolds >= 2Kbp 177
Scaffold N50 17
Scaffold L50 (Mbp) 0.54
# of gaps 515
% of scaffold length in gaps 2.6%
Three largest Scaffolds (Mbp) 1.75, 1.33, 0.96


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator_assembled_Illumina_ESTs 35322 33361 94.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1758 1473
transcript 1483 1224
exon 282 165
intron 67 60
description:
protein length (aa) 426 338
exons per gene 5.26 4
# of gene models 10893


Collaborators

Dr. Romina Gazis, Clark University, USA

Dr. Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.