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Info • Serpulomyces borealis OMC1750 v1.0

Status

[February 2020] The Serpulomyces borealis OMC1750 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Serpulomyces borealis v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 52.29
Sequencing read coverage depth 181.94x
# of contigs 734
# of scaffolds 734
# of scaffolds >= 2Kbp 734
Scaffold N50 46
Scaffold L50 (Mbp) 0.28
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.83, 1.58, 1.27


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 71725 68380 95.3%
Ests est.fasta 176412410 174756786 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1758 1510
transcript 1435 1226
exon 222 139
intron 61 54
description:
protein length (aa) 420 342
exons per gene 6.47 5
# of gene models 12934


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.