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Info • Serpula himantioides (S.lacrymans var shastensis) MUCL38935 v1.0

Status

Assembly v1.0: The assembly release version 1.0 is a draft assembly of Illumina reads (2x76 and 2x100 200bp, 2x76 3kb) constructed with the AllPathsLG assembler.

Summary statistics for the Serpula himantioides MUCL38935 v1.0 (previously identified as S. lacrymans var shastensis SHA21-2) release are below.
Genome Assembly
Genome Assembly size (Mbp) 45.98
Sequencing read coverage depth 127.5
# of contigs 5964
# of scaffolds 4893
# of scaffolds >= 2Kbp 3291
Scaffold N50 554
Scaffold L50 (Mbp) 0.02
# of gaps 1071
% of scaffold length in gaps 1.4%
Three largest Scaffolds (Mbp) 0.44, 0.20, 0.18


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests ESTs 751838 9568 1.3%
Other Isotigs 107971 1042 1.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1455 1154
transcript 1088 855
exon 200 129
intron 85 59
description:
protein length (aa) 360 280
exons per gene 5.44 4
# of gene models 13805


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.