Info • Setomelanomma holmii CBS 110217 v1.0

Status

[May 2015] The Setomelanomma holmii genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2011).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Setomelanomma holmii CBS 110217 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.18
Sequencing read coverage depth 109.5x
# of contigs 651
# of scaffolds 557
# of scaffolds >= 2Kbp 471
Scaffold N50 47
Scaffold L50 (Mbp) 0.23
# of gaps 94
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 1.13, 1.04, 0.88


Gene Models FilteredModels1
length (bp) of: average median
gene 1445 1201
transcript 1297 1062
exon 483 288
intron 90 56
description:
protein length (aa) 432 354
exons per gene 2.68 2
# of gene models 14389


Collaborators

Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.