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Info • Setosphaeria turcica Et28A v2.0

Status

[September 2017] [Aug 2017] This draft assembly was produced using Roche (454) reads, Sanger-sequenced fosmids, and shredded consensi from Velvet-assembled Illumina (Solexa) reads in March 2011. This is an updated annotation of the same assembly using RNA-seq reads from various growth conditions to improve gene calling.

Summary statistics for the Setosphaeria turcica Et28A v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 43.01
Sequencing read coverage depth 58.1x
# of contigs 1959
# of scaffolds 407
# of scaffolds >= 2Kbp 407
Scaffold N50 8
Scaffold L50 (Mbp) 2.14
# of gaps 1552
% of scaffold length in gaps 11.1%
Three largest Scaffolds (Mbp) 4.03, 3.60, 3.52


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 12641 11668 92.3%
Ests est.fasta 323923661 100790539 31.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1631 1361
transcript 1490 1236
exon 563 348
intron 88 57
description:
protein length (aa) 452 369
exons per gene 2.65 2
# of gene models 12028


Collaborators

Gillian Turgeon, Cornell University

Stephen Goodwin, USDA-ARS

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.