Due to the emerging COVID-19 pandemic, JGI will not be accepting or processing any samples because of reduced onsite staffing until further notice.
Info • Setosphaeria turcica NY001 v1.0
Please note that this organism is for archival use only. Please see the current Setosphaeria turcica NY001 v2.0 site for the latest data and information.

Status

[July 2015] The Setosphaeria turcica genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Setosphaeria turcica NY001 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.42
Sequencing read coverage depth 93.8x
# of contigs 1823
# of scaffolds 489
# of scaffolds >= 2Kbp 417
Scaffold N50 45
Scaffold L50 (Mbp) 0.23
# of gaps 1334
% of scaffold length in gaps 6.0%
Three largest Scaffolds (Mbp) 1.75, 1.20, 0.88


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 34363 31720 92.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1624 1379
transcript 1499 1257
exon 595 382
intron 85 58
description:
protein length (aa) 420 337
exons per gene 2.52 2
# of gene models 13422


Collaborators

Gillian Turgeon, Cornell University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.