Status
(May 2016) The Sirobasidium intermedium CBS7805 genome was sequenced using Illumina technology, assembled with AllPathsLG version R49403, and annotated with the JGI annotation pipeline.
Summary statistics for the Sirobasidium intermedium v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 21.96 |
| Sequencing read coverage depth | 92.6x |
| # of contigs | 230 |
| # of scaffolds | 102 |
| # of scaffolds >= 2Kbp | 49 |
| Scaffold N50 | 10 |
| Scaffold L50 (Mbp) | 0.83 |
| # of gaps | 128 |
| % of scaffold length in gaps | 0.9% |
| Three largest Scaffolds (Mbp) | 1.75, 1.54, 1.25 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 53198 | 51741 | 97.3% |
| Ests | est.fasta | 137727754 | 129455377 | 94.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1816 | 1555 |
| transcript | 1563 | 1327 |
| exon | 273 | 166 |
| intron | 56 | 49 |
| description: | ||
| protein length (aa) | 444 | 362 |
| exons per gene | 5.72 | 5 |
| # of gene models | 9453 |
Collaborators
Jon Magnuson, Pacific Northwest National Laboratory
Joseph W. Spatafora, Oregon State University
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
