Status
Oct 2013. The Lentinus tigrinus genome was sequenced using the Illumina technology, assembled with AllPathsLG version R44849, (Gnerre et al., 2010), and annotated using the JGI annotation pipeline and custom analyses.
This sequencing project was originally intended to target Sistotrema brinkmanii but was later found to be a yet-undetermined strain of Lentinus tigrinus.
Summary statistics for the Lentinus tigrinus v1.0 release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 39.76 |
| Sequencing read coverage depth | 103.6 |
| # of contigs | 572 |
| # of scaffolds | 263 |
| # of scaffolds >= 2Kbp | 206 |
| Scaffold N50 | 11 |
| Scaffold L50 (Mbp) | 0.99 |
| # of gaps | 309 |
| % of scaffold length in gaps | 0.8% |
| Three largest Scaffolds (Mbp) | 3.04, 2.86, 2.12 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | EST_contigs | 31545 | 31318 | 99.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1773 | 1529 |
| transcript | 1436 | 1227 |
| exon | 258 | 157 |
| intron | 76 | 60 |
| description: | ||
| protein length (aa) | 411 | 343 |
| exons per gene | 5.57 | 4 |
| # of gene models | 15653 |
Collaborators
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
