Info • Slooffia pilatii Y-17178 v1.0


[May 2018] The Slooffia pilati NRRL Y-17178 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Slooffia pilatii Y-17178 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.80
Sequencing read coverage depth 142.53x
# of contigs 21
# of scaffolds 21
# of scaffolds >= 2Kbp 21
Scaffold N50 5
Scaffold L50 (Mbp) 2.76
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.88, 4.88, 3.26

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 38994 36806 94.4%
Ests est.fasta 136537608 134527862 98.5%

Gene Models FilteredModels1
length (bp) of: average median
gene 2089 1797
transcript 1601 1387
exon 211 130
intron 76 67
protein length (aa) 458 383
exons per gene 7.60 6
# of gene models 12822


Jon Magnuson, Pacific Northwest National Laboratory

Joseph W. Spatafora, Oregon State University


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.