Info • Smittium culicis GSMNP


The genome sequence and gene models of Smittium culicis GSMNP were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on July 3rd, 2017. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Summary statistics for the Smittium culicis GSMNP release are below.
Genome Assembly
Genome Assembly size (Mbp) 77.12
Sequencing read coverage depth
# of contigs 7348
# of scaffolds 6137
# of scaffolds >= 2Kbp 5691
Scaffold N50 1182
Scaffold L50 (Mbp) 0.02
# of gaps 1211
% of scaffold length in gaps 0.6%
Three largest Scaffolds (Mbp) 0.21, 0.14, 0.14

Gene Models ExternalModels
length (bp) of: average median
gene 1951 1464
transcript 1200 828
exon 535 251
intron 161 111
protein length (aa) 400 276
exons per gene 2.24 2
# of gene models 12166


Yan Wang, University of Toronto

Genome Reference(s)


This project was not sequenced at the JGI.