Status
The genome sequence and gene models of Smittium culicis GSMNP were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on July 3rd, 2017. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Smittium culicis GSMNP release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 77.12 |
| Sequencing read coverage depth | |
| # of contigs | 7348 |
| # of scaffolds | 6137 |
| # of scaffolds >= 2Kbp | 5691 |
| Scaffold N50 | 1182 |
| Scaffold L50 (Mbp) | 0.02 |
| # of gaps | 1211 |
| % of scaffold length in gaps | 0.6% |
| Three largest Scaffolds (Mbp) | 0.21, 0.14, 0.14 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1951 | 1464 |
| transcript | 1200 | 828 |
| exon | 535 | 251 |
| intron | 161 | 111 |
| description: | ||
| protein length (aa) | 400 | 276 |
| exons per gene | 2.24 | 2 |
| # of gene models | 12166 |
Collaborators
Yan Wang, University of Toronto
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Wang Y, White MM, Kvist S, Moncalvo JM
Genome-Wide Survey of Gut Fungi (Harpellales) Reveals the First Horizontally Transferred Ubiquitin Gene from a Mosquito Host.
Mol Biol Evol. 2016 Oct;33(10):2544-54. doi: 10.1093/molbev/msw126
Wang Y, White MM, Kvist S, Moncalvo JM
Genome-Wide Survey of Gut Fungi (Harpellales) Reveals the First Horizontally Transferred Ubiquitin Gene from a Mosquito Host.
Mol Biol Evol. 2016 Oct;33(10):2544-54. doi: 10.1093/molbev/msw126
Funding
This project was not sequenced at the JGI.
