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Info • Sordaria brevicollis FGSC1904 v1.0

Status

[December 2017] The Sordaria brevicollis FGSC 1904 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Sordaria brevicollis v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 53.09
Sequencing read coverage depth 75.45x
# of contigs 29
# of scaffolds 29
# of scaffolds >= 2Kbp 29
Scaffold N50 6
Scaffold L50 (Mbp) 3.53
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.99, 5.38, 4.36


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 33590 33141 98.7%
Ests est.fasta 120603273 114356512 94.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1938 1681
transcript 1735 1492
exon 657 396
intron 125 76
description:
protein length (aa) 489 399
exons per gene 2.64 2
# of gene models 10927


Collaborators

Pierre Gladieux, INRA, France

Francis M. Martin, INRA, France.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.