Info • Sordaria humana MPI-SDFR-AT-0083 v1.0

Status

[June 2019] The Sordaria humana MPI-SDFR-AT-0083 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Sordaria humana MPI-SDFR-AT-0083 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.45
Sequencing read coverage depth 161.6x
# of contigs 24
# of scaffolds 24
# of scaffolds >= 2Kbp 24
Scaffold N50 4
Scaffold L50 (Mbp) 3.21
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 7.27, 6.43, 3.52


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 30979 29526 95.3%
Ests est.fasta 38244986 36922468 96.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1909 1667
transcript 1730 1481
exon 677 420
intron 117 76
description:
protein length (aa) 484 394
exons per gene 2.55 2
# of gene models 11075


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Mesny F, Miyauchi S, Thiergart T, Pickel B, Atanasova L, Karlsson M, Hüttel B, Barry KW, Haridas S, Chen C, Bauer D, Andreopoulos W, Pangilinan J, LaButti K, Riley R, Lipzen A, Clum A, Drula E, Henrissat B, Kohler A, Grigoriev IV, Martin FM, Hacquard S
Genetic determinants of endophytism in the Arabidopsis root mycobiome.
Nat Commun. 2021 Dec 10;12(1):7227. doi: 10.1038/s41467-021-27479-y

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.