Due to a planned NERSC power outage, JGI portals will be unavailable 6:00am PDT July 10 - 11:59pm PDT July 14. System Status updates available here.
Info • Spathaspora arborariae UFMG-HMD-19.1 v1.0

Status

[March 2018] The Spathaspora arborariae UFMG-HMD-19.1 genome was sequenced with Sequel, assembled with Falcon version 1.8.8, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Spathaspora arborariae UFMG-HMD-19.1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 12.70
Sequencing read coverage depth 378.15x
# of contigs 15
# of scaffolds 15
# of scaffolds >= 2Kbp 15
Scaffold N50 4
Scaffold L50 (Mbp) 1.57
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.54, 1.78, 1.66


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 7844 6690 85.3%
Ests est.fasta 135873496 131774820 97.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1619 1406
transcript 1593 1386
exon 1359 1191
intron 154 72
description:
protein length (aa) 475 404
exons per gene 1.17 1
# of gene models 5824


Collaborators

Chris Hittinger, U. of Wisconsin-Madison, WI

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.