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Info • Spathularia flavida

Status

The genome of Spathularia flavida was not sequenced by the JGI but by the Oregon State University within the AFTOL project. For more information, contact Prof. Dr. Joey Spatafora (spatafoj@science.oregonstate.edu). JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Spathularia flavida genome v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.54
Sequencing read coverage depth 125.38x
# of contigs 5460
# of scaffolds 2195
# of scaffolds >= 2Kbp 1093
Scaffold N50 180
Scaffold L50 (Mbp) 0.06
# of gaps 3265
% of scaffold length in gaps 1.4%
Three largest Scaffolds (Mbp) 0.32, 0.30, 0.23


Gene Models ExternalModels
length (bp) of: average median
gene 1932 1567
transcript 1644 1341
exon 472 247
intron 118 64
description:
protein length (aa) 548 447
exons per gene 3.48 3
# of gene models 9941


Collaborators

PI: Joey Spatafora, Oregon State University

Funding

This project was not sequenced at the JGI.