Info • Spathaspora suhii UFMG-HMD-16.2 v1.1


The Spathaspora suhii UFMG-HMD-16.2 v1.1 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section. In contrast to the v1.0 portal, this annotation has been improved through use of new RNAseq data.

Genome Assembly
Genome Assembly size (Mbp) 12.76
Sequencing read coverage depth 312.62x
# of contigs 25
# of scaffolds 25
# of scaffolds >= 2Kbp 24
Scaffold N50 3
Scaffold L50 (Mbp) 1.99
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.51, 2.31, 1.99

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 31140 14258 45.8%
Ests est.fasta 109917758 108803013 99.0%

Gene Models FilteredModels1
length (bp) of: average median
gene 1673 1428
transcript 1644 1411
exon 1175 1010
intron 76 41
protein length (aa) 478 399
exons per gene 1.40 1
# of gene models 5854



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.