Info • Spinellus fusiger NRRL 22323 v1.0

Status

[November 2016] The Spinellus fusiger NRRL 22323 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Spinellus fusiger NRRL 22323 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.20
Sequencing read coverage depth 321.56x
# of contigs 217
# of scaffolds 217
# of scaffolds >= 2Kbp 216
Scaffold N50 32
Scaffold L50 (Mbp) 0.35
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.42, 1.17, 0.94


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 101296 82647 81.6%
Ests est.fasta 145913146 140844643 96.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1661 1374
transcript 1350 1107
exon 281 168
intron 84 68
description:
protein length (aa) 380 297
exons per gene 4.80 4
# of gene models 10164


Collaborators

Jason Stajich, UC Riverside, California

Joey Spatafora, Oregon State, Oregon

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Wang Y, Chang Y, Ortañez J, Peña JF, Carter-House D, Reynolds NK, Smith ME, Benny G, Mondo SJ, Salamov A, Lipzen A, Pangilinan J, Guo J, LaButti K, Andreopolous W, Tritt A, Keymanesh K, Yan M, Barry K, Grigoriev IV, Spatafora JW, Stajich JE
Divergent evolution of early terrestrial fungi reveals the evolution of Mucormycosis pathogenicity factors.
Genome Biol Evol. 2023 Mar 17;():. doi: 10.1093/gbe/evad046

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.