Info • Sporormia fimetaria v1.0

Status

[October 2013] The Sporormia fimetaria genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R46652 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately with AllPathsLG to produce an assembly resulted in a 23 X coverage assembly with 1 scaffold, 85 Kb scaffold N50, 84714 bp total scaffold and is available in the downloads section.

Summary statistics for the Sporormia fimetaria CBS 119925 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 25.89
Sequencing read coverage depth 104x
# of contigs 293
# of scaffolds 140
# of scaffolds >= 2Kbp 107
Scaffold N50 15
Scaffold L50 (Mbp) 0.52
# of gaps 153
% of scaffold length in gaps 0.7%
Three largest Scaffolds (Mbp) 1.66, 1.33, 1.29


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 25219 23971 95.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1651 1397
transcript 1524 1272
exon 564 349
intron 77 54
description:
protein length (aa) 441 356
exons per gene 2.70 2
# of gene models 10783


Collaborators

Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.