Info • Sporobolomyces gracilis NRRL Y-5504 v1.0


[October 2018] The Sporobolomyces gracilis NRRL Y-5504 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Sporobolomyces gracilis NRRL Y-5504 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 20.00
Sequencing read coverage depth 216.43x
# of contigs 18
# of scaffolds 18
# of scaffolds >= 2Kbp 18
Scaffold N50 4
Scaffold L50 (Mbp) 2.75
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.75, 3.18, 3.06

Gene Models FilteredModels1
length (bp) of: average median
gene 1794 1496
transcript 1460 1191
exon 257 154
intron 73 60
protein length (aa) 487 397
exons per gene 5.69 5
# of gene models 8038


Jon Magnuson, Pacific Northwest National Laboratory

Joseph W. Spatafora, Oregon State University


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.