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Info • Sporopachydermia lactativora Phaff 68-199 v1.0

Status

[Feb 2016] The Sporopachydermia lactativora genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2011).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Sporopachydermia lactativora v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 15.57
Sequencing read coverage depth 130.7x
# of contigs 408
# of scaffolds 366
# of scaffolds >= 2Kbp 323
Scaffold N50 57
Scaffold L50 (Mbp) 0.08
# of gaps 42
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.38, 0.34, 0.28


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 14715 10654 72.4%
Ests est.fasta 143474347 133286415 92.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1576 1356
transcript 1452 1245
exon 817 523
intron 162 86
description:
protein length (aa) 437 362
exons per gene 1.78 1
# of gene models 5498


Collaborators

Jon Magnuson, Pacific Northwest National Laboratory, USA

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.