Info • Sporobolomyces linderae CBS 7893 v1.0


[March 2014] The Sporobolomyces linderae genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R46652 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Sporobolomyces linderae CBS 7893 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 18.24
Sequencing read coverage depth 93.9x
# of contigs 56
# of scaffolds 35
# of scaffolds >= 2Kbp 25
Scaffold N50 4
Scaffold L50 (Mbp) 2.01
# of gaps 21
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 2.97, 2.39, 2.10

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests Trinity assembled Illumina ESTs 16921 12679 74.9%

Gene Models FilteredModels1
length (bp) of: average median
gene 1767 1532
transcript 1519 1314
exon 243 146
intron 49 41
protein length (aa) 452 377
exons per gene 6.26 5
# of gene models 9062


Joseph Spatafora, Oregon State University, USA
Mary Catherine Aime, Purdue University, USA


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.