Status
This genome was sequenced by Jan Schirawski, Gertrud Mannhaupt, Karin Münc et al. in Department of Organismic Interactions, Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch Strabe 10, 35043 Marburg, Germany (Pathogenicity Determinants in Smut Fungi Revealed by Genome Comparison). Please check their data use policies.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 18.39 |
| Sequencing read coverage depth | 0 |
| # of contigs | 788 |
| # of scaffolds | 44 |
| # of scaffolds >= 2Kbp | 27 |
| Scaffold N50 | 7 |
| Scaffold L50 (Mbp) | 0.77 |
| # of gaps | 744 |
| % of scaffold length in gaps | 1.8% |
| Three largest Scaffolds (Mbp) | 2.45, 1.79, 1.53 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1854 | 1533 |
| transcript | 1794 | 1479 |
| exon | 1228 | 864 |
| intron | 132 | 89 |
| description: | ||
| protein length (aa) | 598 | 493 |
| exons per gene | 1.46 | 1 |
| # of gene models | 6648 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Schirawski J, Mannhaupt G, Münch K, Brefort T, Schipper K, Doehlemann G, Di Stasio M, Rössel N, Mendoza-Mendoza A, Pester D, Müller O, Winterberg B, Meyer E, Ghareeb H, Wollenberg T, Münsterkötter M, Wong P, Walter M, Stukenbrock E, Güldener U, Kahmann R
Pathogenicity determinants in smut fungi revealed by genome comparison.
Science. 2010 Dec 10;330(6010):1546-8. doi: 10.1126/science.1195330
Schirawski J, Mannhaupt G, Münch K, Brefort T, Schipper K, Doehlemann G, Di Stasio M, Rössel N, Mendoza-Mendoza A, Pester D, Müller O, Winterberg B, Meyer E, Ghareeb H, Wollenberg T, Münsterkötter M, Wong P, Walter M, Stukenbrock E, Güldener U, Kahmann R
Pathogenicity determinants in smut fungi revealed by genome comparison.
Science. 2010 Dec 10;330(6010):1546-8. doi: 10.1126/science.1195330
Funding
This project was not sequenced at the JGI.
