Info • Sporobolomyces roseus v1.0

Status

v.1.0 (December 22, 2006): The assembly release version 1.0 of whole genome shotgun reads was constructed with the JGI assembler, Jazz, using paired end sequencing reads at a coverage of 8.1x. After trimming for vector and quality, 244,257 reads assembled into 76 scaffolds totaling 21.2 Mb. Roughly half of the genome is contained in 4 scaffolds all at least 2.22 Mb in length.

The current draft release, version 1.0, includes a total of 5536 gene models predicted and functionally annotated using the JGI annotation pipeline.

Collaborators

  • Kenneth H. Wolfe, Smurfit Institute of Genetics, University of Dublin, Trinity College

Funding

This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program and the by the University of California, Lawrence Livermore National Laboratory under Contract No. W-7405-Eng-48, Lawrence Berkeley National Laboratory under contract No. DE-AC03-76SF00098 and Los Alamos National Laboratory under contract No. W-7405-ENG-36.