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Info • Sporotrichum thermophile v1.0
Please note that this organism is for archival use only. Please see the current Myceliophthora thermophila (Sporotrichum thermophile) v2.0 site for the latest data and information.

Status

v1.0 (June 2009):The Sporotrichum thermophile genome sequence assembly v1.0 was built with Arachne assembler from whole genome shotgun and paired end sequencing reads. The nuclear genome sequence from this draft assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses.

Summary statistics for the Sporotrichum thermophile v1.0 release:

Nuclear Genome Assembly v1.0
Nuclear genome size(Mbp) 38.7
Sequencing read coverage depth 7.66x
Reported # of contigs 293
# of nuclear scaffolds 10
# of nuclear scaffolds >2 10
Nuclear scaffold N/L50 3/5.4 Mbp
Three largest Scaffolds (Mbp) 7.0
7.0
5.4
Gene Models v1.01
length (bp) of: average
gene 1879.4
transcript 1630.1
exon 539.89
intron 125.46
description:  
protein length 478.45
exons per gene 3.02
# of gene models 8806

1 FilteredModels1 gene model set

ESTs Data set # sequences total # mapped to genome # not mapped to genome % mapped to genome
EST clusters Spoth1_EstCluster 10,567 9,065 14% 86%
ESTs Spoth1_ESTs 44,939 42,524 5% 95%

Collaborators

  • Adrian Tsang, Concordia University, Montreal, Canada
  • Scott Baker, Pacific Northwest National Laboratory, Richland, Washington
  • Richard Burlingame, Dyadic International, Inc., Jupiter, Florida
  • Paul Christakopoulos, National Technical University of Athens, Greece
  • Jon Magnuson, Pacific Northwest National Laboratory, Richland, Washington
  • Reginald Storms, Concordia University, Montreal, Canada
  • Yinbo Qu, Shandong University, Shandong, China

Genome Reference(s)

Funding

This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract No. DE-AC02-06NA25396.