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Info • Myceliophthora thermophila (Sporotrichum thermophile) v2.0

Status

v2.0 (December 2010):The Sporotrichum thermophile finished genome sequence assembly v2.0 was built with the was built with Arachne assembler from whole genome shotgun and paired end sequencing reads, followed by assembly finishing. The nuclear genome sequence from this finished assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses.

Summary statistics for the Sporotrichum thermophile v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 38.74
Sequencing read coverage depth Finished
# of contigs 7
# of scaffolds 7
# of scaffolds >= 2Kbp 7
Scaffold N50 3
Scaffold L50 (Mbp) 5.06
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 10.93, 5.45, 5.06


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters EstClusters 10567 9165 86.7%
Ests Ests 44939 42724 95.1%


Gene Models FilteredModels2
length (bp) of: average median
gene 1985 1733
transcript 1754 1524
exon 620 362
intron 128 80
description:
protein length (aa) 475 388
exons per gene 2.83 2
# of gene models 9110


Collaborators

  • Adrian Tsang, Concordia University, Montreal, Canada
  • Scott Baker, Pacific Northwest National Laboratory, Richland, Washington
  • Richard Burlingame, Dyadic International, Inc., Jupiter, Florida
  • Paul Christakopoulos, National Technical University of Athens, Greece
  • Jon Magnuson, Pacific Northwest National Laboratory, Richland, Washington
  • Reginald Storms, Concordia University, Montreal, Canada
  • Yinbo Qu, Shandong University, Shandong, China

Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.