Info • Sporodiniella umbellata MES 1446 v1.0

Status

[July 2017] The Sporodiniella umbellata MES 1446 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Sporodiniella umbellata MES 1446 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 26.24
Sequencing read coverage depth 140.28x
# of contigs 297
# of scaffolds 297
# of scaffolds >= 2Kbp 245
Scaffold N50 43
Scaffold L50 (Mbp) 0.18
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.79, 0.61, 0.54


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 51233 45770 89.3%
Ests est.fasta 161773864 154655118 95.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1530 1287
transcript 1295 1071
exon 305 182
intron 75 61
description:
protein length (aa) 389 312
exons per gene 4.25 4
# of gene models 10781


Collaborators

Joey Spatafora, Oregon State, Oregon

Jason Stajich, UC Riverside, California

Matthew Smith, University of Florida, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.