Status
The genome sequence and gene models of Stachybotrys chlorohalonata IBT 40285 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
Summary statistics for the Stachybotrys chlorohalonata IBT
40285 are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 34.39 |
Sequencing read coverage depth | 196x |
# of contigs | 5165 |
# of scaffolds | 2802 |
# of scaffolds >= 2Kbp | 854 |
Scaffold N50 | 83 |
Scaffold L50 (Mbp) | 0.11 |
# of gaps | 2363 |
% of scaffold length in gaps | 0.8% |
Three largest Scaffolds (Mbp) | 0.48, 0.47, 0.45 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1634 | 1362 |
transcript | 1477 | 1215 |
exon | 533 | 294 |
intron | 90 | 61 |
description: | ||
protein length (aa) | 492 | 405 |
exons per gene | 2.77 | 2 |
# of gene models | 10706 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Semeiks J, Borek D, Otwinowski Z, Grishin NV
Comparative genome sequencing reveals chemotype-specific gene clusters in the toxigenic black mold Stachybotrys.
BMC Genomics. 2014 Jul 12;15():590. doi: 10.1186/1471-2164-15-590
Semeiks J, Borek D, Otwinowski Z, Grishin NV
Comparative genome sequencing reveals chemotype-specific gene clusters in the toxigenic black mold Stachybotrys.
BMC Genomics. 2014 Jul 12;15():590. doi: 10.1186/1471-2164-15-590
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales
Funding
This project was not sequenced at the JGI.