Info • Starmerella floricola CF1 v2.0

Status

[November 2020] The Starmerella floricola CF1 v2.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Starmerella floricola CF1 v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 10.57
Sequencing read coverage depth 849.68x
# of contigs 8
# of scaffolds 8
# of scaffolds >= 2Kbp 8
Scaffold N50 2
Scaffold L50 (Mbp) 3.22
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.49, 3.22, 2.50


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 6359 5597 88.0%
Ests est.fasta 126112586 125652962 99.6%


Gene Models FilteredModels2
length (bp) of: average median
gene 1652 1424
transcript 1638 1416
exon 1516 1320
intron 178 101
description:
protein length (aa) 457 380
exons per gene 1.08 1
# of gene models 4802


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.