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Info • Stanjemonium grisellum CBS 655.79 v1.0

Status

(Dec 2014) The Stanjemonium grisellum CBS 655.79 genome was sequenced using Illumina and assembled using AllPathsLG.

Summary statistics for the Stanjemonium grisellum CBS 655.79 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.00
Sequencing read coverage depth 103
# of contigs 831
# of scaffolds 151
# of scaffolds >= 2Kbp 132
Scaffold N50 10
Scaffold L50 (Mbp) 1.26
# of gaps 680
% of scaffold length in gaps 3.4%
Three largest Scaffolds (Mbp) 2.47, 2.43, 2.08


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 28845 27904 96.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1725 1461
transcript 1600 1344
exon 638 385
intron 85 59
description:
protein length (aa) 453 361
exons per gene 2.51 2
# of gene models 11832


Collaborators

Kathryn Bushley, University of Minnesota

Derek Johnson, Oregon State University

Joey Spatafora, Oregon State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.