Status
[February 2023] The Staphylotrichum longicolle CBS 103.79 genome was sequenced using Illumina HiSeq 2500, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 34.70 |
| Sequencing read coverage depth | 17.92 |
| # of contigs | 1688 |
| # of scaffolds | 1523 |
| # of scaffolds >= 2Kbp | 1354 |
| Scaffold N50 | 224 |
| Scaffold L50 (Mbp) | 0.05 |
| # of gaps | 165 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 0.33, 0.28, 0.20 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1691 | 1372 |
| transcript | 1472 | 1197 |
| exon | 494 | 270 |
| intron | 112 | 70 |
| description: | ||
| protein length (aa) | 491 | 399 |
| exons per gene | 2.98 | 2 |
| # of gene models | 10752 |
Collaborators
- Adrian Tsang, Concordia University, Quebec, Canada
- Amy Powell, Sandia National Laboratories
- Donald Natvig, University of New Mexico
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Hensen N, Bonometti L, Westerberg I, Brännström IO, Guillou S, Cros-Aarteil S, Calhoun S, Haridas S, Kuo A, Mondo S, Pangilinan J, Riley R, LaButti K, Andreopoulos B, Lipzen A, Chen C, Yan M, Daum C, Ng V, Clum A, Steindorff A, Ohm RA, Martin F, Silar P, Natvig DO, Lalanne C, Gautier V, Ament-Velásquez SL, Kruys Å, Hutchinson MI, Powell AJ, Barry K, Miller AN, Grigoriev IV, Debuchy R, Gladieux P, Hiltunen Thorén M, Johannesson H
Genome-scale phylogeny and comparative genomics of the fungal order Sordariales.
Mol Phylogenet Evol. 2023 Oct 10;189():107938. doi: 10.1016/j.ympev.2023.107938
Hensen N, Bonometti L, Westerberg I, Brännström IO, Guillou S, Cros-Aarteil S, Calhoun S, Haridas S, Kuo A, Mondo S, Pangilinan J, Riley R, LaButti K, Andreopoulos B, Lipzen A, Chen C, Yan M, Daum C, Ng V, Clum A, Steindorff A, Ohm RA, Martin F, Silar P, Natvig DO, Lalanne C, Gautier V, Ament-Velásquez SL, Kruys Å, Hutchinson MI, Powell AJ, Barry K, Miller AN, Grigoriev IV, Debuchy R, Gladieux P, Hiltunen Thorén M, Johannesson H
Genome-scale phylogeny and comparative genomics of the fungal order Sordariales.
Mol Phylogenet Evol. 2023 Oct 10;189():107938. doi: 10.1016/j.ympev.2023.107938
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Sordariomycetidae Sordariales
- JGI Thermophilic fungi group
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
