Info • Stagonospora nodorum SN15 v2.0

Status

Stagonospora nodorum SN15 was sequenced by the Broad Institute of MIT and Harvard as part of their Fungal Genome Initiative. For more information on the project please see http://www.broad.mit.edu/annotation/genome/stagonospora_nodorum.2/Info.html. JGI Eukaryotic tools were set up to assist with manual curation and comparative analysis of Dothidiomycetes genomes.

The gene models have been updated since the original release: 3603 models have been removed, bringing the new number of gene models to 12380.

Summary statistics for the Stagonospora nodorum v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 37.21
Sequencing read coverage depth unknown
# of contigs 494
# of scaffolds 108
# of scaffolds >= 2Kbp 108
Scaffold N50 13
Scaffold L50 (Mbp) 1.05
# of gaps 386
% of scaffold length in gaps 0.4%
Three largest Scaffolds (Mbp) 2.53, 1.64, 1.61


Gene Models ExternalModels
length (bp) of: average median
gene 1469 1224
transcript 1319 1095
exon 495 295
intron 92 57
description:
protein length (aa) 424 348
exons per gene 2.67 2
# of gene models 12380


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Hane JK, Lowe RG, Solomon PS, Tan KC, Schoch CL, Spatafora JW, Crous PW, Kodira C, Birren BW, Galagan JE, Torriani SF, McDonald BA, Oliver RP
Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum.
Plant Cell. 2007 Nov;19(11):3347-68. doi: 10.1105/tpc.107.052829

Funding

This project was not sequenced at the JGI.