Info • Starmerella sorbosivorans NCYC 2938

Status

This genome was sequenced, assembled and annotated as part of the Y1000+ Project and imported into MycoCosm for comparative purposes.

All published models are available as ExternalModels. In order to ensure this genome is comparable to those sequenced and annotated by the JGI, we applied standard filters to ExternalModels to produce the initial GeneCatalog. Models were excluded based on one of the following classifications: 1) association with repetitive elements, 2) pseudogenes with internal stop codons, 3) alternative isoforms or overlapping transcript models, 4) alleles on secondary scaffolds, and 5) short models lacking functional annotation. The JGI Annotation Pipeline was used to add functional annotation to the genes. Please note that this copy of the genome is not maintained by the y1000 team and is not automatically updated.

Genome Assembly
Genome Assembly size (Mbp) 10.28
Sequencing read coverage depth
# of contigs 613
# of scaffolds 609
# of scaffolds >= 2Kbp 384
Scaffold N50 47
Scaffold L50 (Mbp) 0.06
# of gaps 4
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.48, 0.31, 0.28


Gene Models FilteredModels1
length (bp) of: average median
gene 1388 1122
transcript 1373 1113
exon 1273 1044
intron 193 83
description:
protein length (aa) 458 371
exons per gene 1.08 1
# of gene models 5016


Collaborators

Genome Reference(s)

Funding

This project was not sequenced at the JGI.