Info • Stagonospora sp. SRC1lsM3a v1.0

Status

[Dec 2014] The Stagonospora sp. genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Stagonospora sp. SRC1lsM3a v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.08
Sequencing read coverage depth 87.5x
# of contigs 120
# of scaffolds 44
# of scaffolds >= 2Kbp 43
Scaffold N50 8
Scaffold L50 (Mbp) 1.54
# of gaps 76
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 3.25, 3.15, 2.37


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 20767 20636 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1725 1501
transcript 1594 1386
exon 588 379
intron 79 56
description:
protein length (aa) 457 385
exons per gene 2.71 2
# of gene models 14430


Collaborators

Colleen Hansel at the Woods Hole Oceanographic Institution.
Cara M. Santelli at the Smithsonian Institution, Washington, DC.

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Zeiner CA, Purvine SO, Zink EM, Paša-Tolić L, Chaput DL, Haridas S, Wu S, LaButti K, Grigoriev IV, Henrissat B, Santelli CM, Hansel CM
Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi.
PLoS One. 2016;11(7):e0157844. doi: 10.1371/journal.pone.0157844

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.