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Info • Stereum hirsutum FP-91666 SS1 v1.0

Status

This draft assembly used data from three sequencing technologies: Sanger, Roche (454) and Illumina. The Illumina data were assembled using Velvet. The Velvet assembly was subsequently shredded and combined with the Sanger and 454 data, and assembled with Newbler.

Summary statistics for the Stereum hirsutum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 46.51
Sequencing read coverage depth 44.77
# of contigs 995
# of scaffolds 159
# of scaffolds >= 2Kbp 159
Scaffold N50 9
Scaffold L50 (Mbp) 1.80
# of gaps 418
% of scaffold length in gaps 1.9%
Three largest Scaffolds (Mbp) 3.83, 3.73, 3.52


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters EstClusters 15662 14724 94.0%
Other EST1 1282258 1232851 96.1%
Other EST2 1608805 1532476 95.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 2040 1717
transcript 1564 1302
exon 240 141
intron 88 66
description:
protein length (aa) 458 379
exons per gene 6.52 5
# of gene models 14072


Collaborators

Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.