Due to the emerging COVID-19 pandemic, JGI will not be accepting or processing any samples because of reduced onsite staffing until further notice.
Info • Stemphylium lycopersici CIDEFI-216

Status

The genome sequence and gene prediction of Stemphylium lycopersici CIDEFI 216 have not been determined by the JGI, but were downloaded from NCBI on June 1, 2017. In order to allow comparative analyses with other fungal genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Assembly Method :: SOAPdenovo v. SOAPdenovo2
Sequencing Technology :: Illumina HiSeq

Summary statistics for the Stemphylium lycopersici release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.17
Sequencing read coverage depth 77.39x
# of contigs 1322
# of scaffolds 414
# of scaffolds >= 2Kbp 331
Scaffold N50 21
Scaffold L50 (Mbp) 0.50
# of gaps 908
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 1.57, 1.55, 1.22


Gene Models ExternalModels
length (bp) of: average median
gene 2118 1611
transcript 1798 1431
exon 553 308
intron 144 61
description:
protein length (aa) 599 477
exons per gene 3.25 3
# of gene models 8997


Genome Reference(s)

Funding

This project was not sequenced at the JGI.