Info • Stomiopeltis betulae CBS114420 v1.0


[June 2018] The Stomiopeltis betulae CBS114420 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Stomiopeltis betulae v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.55
Sequencing read coverage depth 92.6x
# of contigs 247
# of scaffolds 49
# of scaffolds >= 2Kbp 44
Scaffold N50 8
Scaffold L50 (Mbp) 2.06
# of gaps 198
% of scaffold length in gaps 0.8%
Three largest Scaffolds (Mbp) 3.28, 2.81, 2.30

Gene Models FilteredModels1
length (bp) of: average median
gene 1567 1306
transcript 1398 1143
exon 451 260
intron 83 58
protein length (aa) 466 381
exons per gene 3.10 3
# of gene models 12707


Jon Magnuson, Pacific Northwest National Laboratory, USA

Joseph Spatafora, Oregon State University, USA


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.