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Info • Sugiyamaella americana NRRL YB-2067 v1.0

Status

(May 2016) The Sugiyamaella americana NRRL YB-2067 genome was sequenced using Illumina technology, assembled with AllPathsLG version R49403, and annotated with the JGI annotation pipeline.

Summary statistics for the Sugiyamaella americana v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 16.48
Sequencing read coverage depth 100x
# of contigs 223
# of scaffolds 52
# of scaffolds >= 2Kbp 48
Scaffold N50 5
Scaffold L50 (Mbp) 1.27
# of gaps 171
% of scaffold length in gaps 1.2%
Three largest Scaffolds (Mbp) 2.64, 1.91, 1.53


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 13030 11811 90.6%
Ests est.fasta 145865224 142166233 97.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1519 1290
transcript 1452 1236
exon 912 681
intron 116 76
description:
protein length (aa) 448 372
exons per gene 1.59 1
# of gene models 6288


Collaborators

Jon Magnuson, Pacific Northwest National Laboratory

Joseph W. Spatafora, Oregon State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.