Status
(May 2016) The Sugiyamaella americana NRRL YB-2067 genome was sequenced using Illumina technology, assembled with AllPathsLG version R49403, and annotated with the JGI annotation pipeline.
Summary statistics for the Sugiyamaella americana v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 16.48 |
| Sequencing read coverage depth | 100x |
| # of contigs | 223 |
| # of scaffolds | 52 |
| # of scaffolds >= 2Kbp | 48 |
| Scaffold N50 | 5 |
| Scaffold L50 (Mbp) | 1.27 |
| # of gaps | 171 |
| % of scaffold length in gaps | 1.2% |
| Three largest Scaffolds (Mbp) | 2.64, 1.91, 1.53 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 13030 | 11811 | 90.6% |
| Ests | est.fasta | 145865224 | 142166233 | 97.5% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1519 | 1290 |
| transcript | 1452 | 1236 |
| exon | 912 | 681 |
| intron | 116 | 76 |
| description: | ||
| protein length (aa) | 448 | 372 |
| exons per gene | 1.59 | 1 |
| # of gene models | 6288 |
Collaborators
Jon Magnuson, Pacific Northwest National Laboratory
Joseph W. Spatafora, Oregon State University
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
